For limited company contractors

Accounting for Contractors

A guide to accounting for UK contractors, covering IR35 rules, company structures, tax-efficient extraction and record-keeping.

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Contracting in the UK offers flexibility and often higher day rates than permanent employment, but it comes with accounting responsibilities that permanent employees never have to think about. Whether you operate through a limited company, an umbrella company or as a sole trader, getting your accounting right is what keeps more of your earnings in your pocket.

Choosing your structure

Most contractors operate through one of three structures:

Structure Pros Cons
Limited company (PSC) Tax-efficient, professional image, limited liability Admin overhead, IR35 risk, filing requirements
Umbrella company Simple, no admin, payroll handled for you Higher effective tax rate, less control
Sole trader Easy setup, simple bookkeeping Unlimited liability, less tax-efficient at higher earnings

If you are earning above £50,000, a limited company is usually the most tax-efficient option – provided your contracts fall outside IR35.

IR35: the elephant in the room

IR35 is the informal name for the off-payroll working rules. These rules determine whether a contractor is genuinely self-employed or whether they would be an employee if engaged directly.

Who determines IR35 status?

Since April 2021, for medium and large private sector clients, the end client determines your IR35 status, not you. For small private sector clients (within the Companies Act small company limits on turnover, balance sheet total and employees, as applied to the off-payroll rules), the contractor still makes the determination.

Inside IR35

If your contract is inside IR35, the fee-payer (usually an agency) must deduct Income Tax and National Insurance before paying you. You are effectively taxed as an employee. In this situation, an umbrella company is often simpler than running a limited company, since the tax advantage of a PSC disappears.

Outside IR35

If your contract is outside IR35, you can take advantage of the limited company structure – paying yourself a combination of salary and dividends to minimise your overall tax and NIC burden.

Key factors HMRC considers

Factor Points to “outside” Points to “inside”
Control You decide how, when and where you work Client dictates working methods, hours and location
Substitution You can send a qualified substitute Client expects you personally
Mutuality of obligation No obligation to offer or accept work between contracts Ongoing obligation even between projects
Financial risk You bear risk (fixed price, own equipment, liability insurance) No financial risk; paid by the hour/day regardless
Part and parcel You are not integrated into the client’s organisation You are treated like a permanent employee

Always get a written status determination from your client and keep it on file.

Contracting through your own limited company? Start your free trial.

Tax-efficient pay: salary and dividends

For contractors operating outside IR35 through a limited company, the standard approach is to pay yourself:

  1. A salary at or near the personal allowance – this uses your tax-free allowance and, above the Lower Earnings Limit, records a qualifying year for the State Pension
  2. Employer pension contributions – deductible for Corporation Tax and not subject to Income Tax or NIC
  3. Dividends from remaining profits – taxed at the dividend ordinary, upper or additional rate above the dividend allowance

This salary-dividend split can save a contractor earning £100,000 a substantial sum each year compared to taking the same amount as employment income.

Allowable expenses

As a contractor, you can claim expenses that are incurred wholly and exclusively for business purposes:

The 24-month rule

You can claim travel and subsistence expenses to a temporary workplace. However, if you work at the same location for more than 24 months (or expect to), it becomes a permanent workplace and these expenses are no longer deductible.

If your contract is extended and you know you will be at the same site for over 24 months, you must stop claiming travel expenses from the point you know this.

VAT for contractors

The VAT registration threshold is £90,000. Many contractors exceed this, so VAT registration is common.

If all your clients are VAT-registered businesses, charging VAT is not a real cost to them (they reclaim it), so registration has no negative impact on your competitiveness. You can also reclaim input VAT on your business expenses.

The Flat Rate Scheme can simplify your VAT administration. You charge 20% VAT on your invoices but pay HMRC a lower flat rate percentage of your gross turnover. For IT contractors, the flat rate is typically 14.5%, meaning you keep the 5.5% difference.

However, since April 2017, “limited cost traders” (businesses whose goods cost less than 2% of turnover) pay a flat rate of 16.5%, which makes the scheme less attractive for many service-based contractors. Check whether the standard scheme or Flat Rate Scheme works better for your situation.

Record-keeping

Contractors must maintain the same records as any other business:

Keep records for at least 6 years from the end of the accounting period.

Key deadlines

Deadline What Penalty for missing
9 months + 1 day after year end Corporation Tax payment Interest from due date
12 months after year end Corporation Tax return (CT600) £100 immediately, £200 after 3 months
9 months after year end Annual accounts at Companies House £150-£1,500
Annually Confirmation statement Company may be struck off
Quarterly VAT returns (if registered) Points-based penalties
31 January Personal Self Assessment £100 immediately

Common contractor accounting mistakes

Getting set up

If you are new to contracting:

  1. Incorporate your limited company at Companies House (£12 online)
  2. Register for Corporation Tax with HMRC (within 3 months of starting to trade)
  3. Open a business bank account
  4. Register for VAT if your turnover will exceed £90,000
  5. Get professional indemnity insurance
  6. Choose accounting software to manage your bookkeeping, invoicing and VAT
  7. Consider an accountant – a good contractor accountant more than pays for themselves in tax savings and compliance

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